Genome2D webserver for analysis and visualization of bacterial genomes and transcriptome data

by Anne de Jong, Molecular Genetics, Linnaeusborg 7, University of Groningen


Whats is Genome2D?

Genome2D is een collection of Bioinformatics tools which make the live of a biologists and/or bioinformatician easy when performing prokaryote genomics analysis. This webserver gives acces to all publicaly available fully sequened genomes and furthermore we re-annotated all genomes to build a database for functional analysis of RNA-seq and DNA microarray data. 

Commonly used operations such as reformatting DNA and Proteins files, aligining tables, getting multiple DNA fragments, retrieve annoations of gene lists etc.. can be found in the Main menu and the Toolbox.

 

 

At Molecular Genetics of the University of Groningen we have special interest in genomics and transcriptomics of Gram-positive bacteria such as;

Lactococcus lactis, Bacillus subtilis, Streptococcus pneumoniae, Bacillus cereus and Enterococcus feacalis.

 MG 7347


 

 

 

 

 

 

 

 

 

 

 

 Night view of the Zernike campus of the University of Groningen. Photography: Anne de Jong

 

keywords: bacteria, prokaryote, genomics, genomes, database, operons, promoters, terminators, intergenic regions, DNA motif mining, transcriptomics, blast, prediction, DNA microarray, RNAseq analysis, functional analysis, classification, KEGG pathways, COG, GO, InterPro, regulons, normalisation, limma, visualisation, genome map, genomic tools, table conversions, fasta, tab delimited, aligning tables, data handling